PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_75524.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family NAC
Protein Properties Length: 256aa    MW: 28370 Da    PI: 10.148
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_75524.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM159.81.1e-49461771129
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                   +ppGfrFhPt+eel+++yL+kkv++++++l +vi++vd++k+ePwd+++  ++ +  +++wy Fs++dkky+tg+r+nrat+ g+Wkatg+dk+++ 
  MLOC_75524.2  46 VPPGFRFHPTEEELLTYYLAKKVASQRIDL-DVIPDVDLNKLEPWDIQEccRIGTgPQNDWYLFSHKDKKYPTGTRTNRATTVGFWKATGRDKAIYP 141
                   69****************************.9***************963444443456*************************************9 PP

           NAM  95 k.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                   + +  ++g++ktLvfy+grap+g+k+dW+mheyrle
  MLOC_75524.2 142 AaGYGHIGMRKTLVFYQGRAPHGHKSDWIMHEYRLE 177
                   867778****************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.58E-5236182IPR003441NAC domain
PROSITE profilePS5100549.46646198IPR003441NAC domain
PfamPF023652.0E-2647176IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MSVAVVSLYP ITGNNFIPVD PTPSSPLHYC TTRSIMSISV NGQSVVPPGF RFHPTEEELL  60
TYYLAKKVAS QRIDLDVIPD VDLNKLEPWD IQECCRIGTG PQNDWYLFSH KDKKYPTGTR  120
TNRATTVGFW KATGRDKAIY PAAGYGHIGM RKTLVFYQGR APHGHKSDWI MHEYRLEDAT  180
TPGNNPANRA IGNAPYYPGS SSSRYAAWSG TSRRRRKTGG SSAGCSRRRT SSCSNKLTRT  240
AVAAAQRPTT WSPPVP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-434617615140Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3678010.0AK367801.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2062J03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001147319.17e-90NAM protein
SwissprotQ9M2742e-84NAC66_ARATH; NAC domain-containing protein 66
TrEMBLM0Z1R00.0M0Z1R0_HORVD; Uncharacterized protein
STRINGMLOC_75524.11e-152(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61910.12e-85NAC domain protein 66